Tools:

Sequence sites, features and motifs

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Tool Library list page for genomics topic with tag 'Sequence sites, features and motifs'

2 tools

hmmer

Sequence analysis

Sequence sites, features and motifs

Gene and protein families

Formatting

This tool is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models. The new HMMER3 project, HMMER is now as fast as BLAST for protein search.

Watchers

hmmer

Sequence sites, features and motifs

Database search

Protein feature detection

Older version of the HMMER3 program (https://bio.tools/hmmer3) used for searching sequence databases for sequence homologs, and for making sequence alignments.