Tools for topic used with Transcriptomics
Tool Library list page for genomics topic with tag Transcriptomics
- Kallisto
A program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment.
0 - salmon
A tool for transcript expression quantification from RNA-seq data
0 - STAR
Ultrafast universal RNA-seq aligner
0 - stringtie
Fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus.
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