BBMap is a fast splice-aware aligner for RNA and DNA. It is faster than almost all short-read aligners, yet retains unrivaled sensitivity and specifi

DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classif

Accurate Variant Calling from Single Cell DNA Sequencing Data. ProSolo: bulk backing vocals for single cell solos. ProSolo is a variant caller for m

A software package with various utilities for processing alignments in the SAM format, including variant calling and alignment viewing.

Subread is a general-purpose read aligner which can be used to map both genomic DNA-seq reads and RNA-seq reads. It uses a new mapping paradigm called