Workflows for genomics classification with tag Benchmark



3 workflows

This is the ENCODE-DCC RNA-sequencing pipeline. The scope of the pipeline is to align reads, generate signal tracks, and quantify genes and isoforms.

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This benchmarking workflow that can be used to assess performance of germline variant calling pipelines based on testing with GIAB samples.

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Variant calling for long reads - utilizes PEPPER for SNP calling, Margin for haplotyping and phasing, and DeepVariant for genotype calling

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