Workflows for genomics classification with tag Benchmark



2 workflows

This repository contains the benchmarking workflow that can be used to assess performance of germline variant calling pipelines based on testing with GIAB samples

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This is the ENCODE-DCC RNA-sequencing pipeline. The scope of the pipeline is to align reads, generate signal tracks, and quantify genes and isoforms. RNA-seq data is valuable as it allows the measure of RNA expression levels as a transcriptional readout and the study of RNA structures in order to understand how RNA-based mechanisms impact gene regulation and thus disease and phenotypic variation. Since RNA populations are diverse, the ENCODE Consortium has developed the following RNA-seq pipelines:

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