BioWDL Somatic variant calling pipeline (from fastq)

Version:
4.1.0
Identifier: WF_6cb3ec.92
Workflow
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Description

This workflow uses several programs to call somatic variants and aggregate the results.

  • strelka
  • mutect2
  • vardict
  • manta
  • somaticseq

Job Costs

Not enough data to estimate job costs for this workflow yet.

Links
  • BioWDL Somatic Variantcalling Homepage

    https://biowdl.github.io/somatic-variantcalling/v2.2.1/index.html

  • BioWDL Somatic Variantcalling Repository

    https://github.com/biowdl/somatic-variantcalling

Code Repository
  • https://github.com/truwl/biowdl-somatic-fastq

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