ENCODE ChIP-seq pipeline2

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Version:
v1.6.0

Identifier: WF_dd6938.8f

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Overview

ENCODE Transcription Factor and Histone ChIP-Seq processing pipeline This ChIP-Seq pipeline is based off the ENCODE (phase-3) transcription factor and histone ChIP-seq pipeline specifications (by Anshul Kundaje) in this [google doc](https://docs.google.com/document/d/1lG_Rd7fnYgRpSIqrIfuVlAz2dW1VaSQThzk836Db99c/edit#).

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Associations

Instances

REF ENCSR936XTK (subsampled to Chr 19 only)
ZNF143 ChIP-seq (TF ChIP-seq) on human GM12878 (cell line). See experiment details at https://www.encodeproject.org/experiments/ENCSR936XTK/
0
REF ENCSR000DYI (subsampled to Chr 19 only)
CEBPB ChIP-seq (TF ChIP-seq) on human A549 (cell line) produced by Snyder lab. See experiment details at https://www.encodeproject.org/experiments/ENCSR000DYI/
0
Re-run of ENCODE ChIP-seq analysis ENCSR936XTK
ZNF143 ChIP-seq (TF ChIP-seq) on human GM12878 (cell line). See experiment details at https://www.encodeproject.org/experiments/ENCSR936XTK/
0
Re-run of ENCODE ChIP-seq analysis ENCSR859FDL
ZNF687 ChIP-seq on human GM12878 See experiment details at https://www.encodeproject.org/experiments/ENCSR859FDL/
0

Tools

None Found

Code Repository

GitHub
https://github.com/ENCODE-DCC/chip-seq-pipeline2/

Websites

Encode Project Website