ENCODE Long read RNA-seq pipeline

Version:
v2.0.0
Identifier: WF_308a61.8f
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Description

This is the ENCODE-DCC Long read RNA-seq pipeline. This pipeline can handle data from both PacBio and Oxford Nanopore platforms. Pipeline does read alignment, corrects for mismatches, microindels and non-canonical splice junctions and then provides quantification and QC-metrics.


Job Costs*

Examples:

Public example Job cost Notes
ENCSR194YUY $ 8.59 Reproducing https://www.encodeproject.org/experiments/ENCSR194YUY/
ENCSR995WKW long read RNA-seq on human adrenal gland $10.35 Reproducing https://www.encodeproject.org/experiments/ENCSR995WKW/

*Job cost examples are for estimates only. To get a more accurate idea of job costs, try running a single job before running many jobs.

Links
  • Encode Project Website

    https://www.encodeproject.org/rna-seq/long-read-rna-seq/

Code Repository
  • GitHub

    https://github.com/ENCODE-DCC/long-read-rna-pipeline

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