This is the ENCODE-DCC Long read RNA-seq pipeline. This pipeline can handle data from both PacBio and Oxford Nanopore platforms. Pipeline does read alignment, corrects for mismatches, microindels and non-canonical splice junctions and then provides quantification and QC-metrics.
|Public example||Job cost||Notes|
|ENCSR194YUY||$ 8.59||Reproducing https://www.encodeproject.org/experiments/ENCSR194YUY/|
|ENCSR995WKW long read RNA-seq on human adrenal gland||$10.35||Reproducing https://www.encodeproject.org/experiments/ENCSR995WKW/|
*Job cost examples are for estimates only. To get a more accurate idea of job costs, try running a single job before running many jobs.
- Encode Project Website