ENCODE Long read RNA-seq pipeline
Version:
v2.0.0
Identifier: WF_308a61.8f
Workflow
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Description
This is the ENCODE-DCC Long read RNA-seq pipeline. This pipeline can handle data from both PacBio and Oxford Nanopore platforms. Pipeline does read alignment, corrects for mismatches, microindels and non-canonical splice junctions and then provides quantification and QC-metrics.
Job Costs*
Examples:
Public example | Job cost | Notes |
---|---|---|
ENCSR194YUY | $ 8.59 | Reproducing https://www.encodeproject.org/experiments/ENCSR194YUY/ |
ENCSR995WKW long read RNA-seq on human adrenal gland | $10.35 | Reproducing https://www.encodeproject.org/experiments/ENCSR995WKW/ |
*Job cost examples are for estimates only. To get a more accurate idea of job costs, try running a single job before running many jobs.
Links
-
Encode Project Website
https://www.encodeproject.org/rna-seq/long-read-rna-seq/
Code Repository
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GitHub
https://github.com/ENCODE-DCC/long-read-rna-pipeline
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