GTEx

Version:
v10
Identifier: WF_254045.d5
Workflow

Description


This workflow contains all components of the RNA-seq pipeline used by the GTEx Consortium, including alignment, expression quantification, and quality control. - SamToFastq: BAM to FASTQ conversion - STAR: spliced alignment of RNA sequence reads (v2.7.9a) - Picard MarkDuplicates: mark duplicate reads - RSEM transcript expression quantification (v1.3.3) - bamsync: utility for transferring QC flags from the input BAM and for re-generating read group IDs - RNA-SeQC: QC metrics and gene-level expression quantification (v2.4.2)
Links

Tags

No Tags found